BMC Bioinformatics - Journal Impact The Journal Impact 2019-2020 of BMC Bioinformatics is 2.610, which is just updated in 2020. BMC Bioinformatics. BMC Bioinformatics Methodology article Open Access EVEREST: automatic identification and classification of protein domains in all protein sequences Elon Portugaly* 1, Amir Harel , Nathan Linial1 and Michal Linial2 Address: 1School of Computer Science & Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel and 2Department of Biological MUMAL2: Improving Sensitivity in Shotgun Proteomics Using Cost Sensitive Artificial Neural Networks and a Threshold Selector Algorithm FR Cerqueira et al. BMC Bioinformatics Proceedings Open Access SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition Iain Melvin1,2, Eugene Ie3, Rui Kuang4, Jason Weston1, William Stafford Noble5 and Christina Leslie*2,6 Our systems will continue to remind you of the original timelines but we intend to be highly flexible at this time. Nature Protocols Privacy This month, we would like to highlight some new experimental methods, data analyses and software reported in the BMC series journals. This similarly motivated the present study of a small group of nine base-pair stem DNA hairpins consist-ing of all adenosines on the 3' side of the molecule, except for … California Privacy Statement, Comparative analysis of differential gene expression analysis tools for single-cell RNA sequencing data, Visualization methods for differential expression analysis, A comparison of three programming languages for a full-fledged next-generation sequencing tool. Reliable and reproducible methods are the building blocks of every study and lay the foundations for new discoveries and advancements. Published on: 27 December 2019. 2011;27(11):1571–2. National Center for Biotechnology Information, U.S. National Library of Medicine 8600 Rockville Pike, Bethesda MD, 20894 USA. Krueger F, Andrews SR. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. 4. BMC Bioinformatics Methodology article Open Access Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking Shugo Hamahashi 1,2,3, Shuichi Onami* and Hiroaki Kitano1,2,4 Alter, Michael Houghton and Charles M. Rice for their discovery of Hepatitis C virus. 2016 Dec 15. BMC Bioinformatics is pleased to announce papers included as part of the thematic series "Machine learning for computational and systems biology" are now being published. External link. Springer Nature. The Editor of BMC Bioinformatics is delighted to announce a 6 month author opt in pilot in partnership with Code Ocean, to faciliate peer review of source code. BMC Bioinformatics Research article Open Access Which missing value imputation method to use in expression profiles: a comparative study and two selection schemes Guy N Brock1, John R Shaffer2, Richard E Blakesley 3, Meredith J Lotz and George C Tseng*2,3,4 DHHS. 8:BFnprot2013084, Authors: Peter Langfelder and Steve Horvath, Authors: Joshua S Yuan, Ann Reed, Feng Chen and C Neal Stewart Jr, Authors: Charlotte Soneson and Mauro Delorenzi. Please do let us know if you need additional time. BMC Bioinformatics is a peer-reviewed open access scientific journal covering bioinformatics and computational biology published by BioMed Central. 2013 Text mining has its limits, however. Published on: 25 August 2020. BMC Bioinformatics Software Open Access MetaMQAP: A meta-server for the quality assessment of protein models Marcin Pawlowski* 1,2, Michal J Gajda , Ryszard Matlak1,2 and Janusz M Bujnicki*1,2 Address: 1Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Trojdena 4, PL-02-109 BMC Bioinformatics 2009, 10(Suppl 14):S5. Announcement: BMC Bioinformatics is piloting code peer review with Code Ocean, Thematic series: Machine learning for computational and systems biology, ideal: an R/Bioconductor package for interactive differential expression analysis, High-throughput analysis suggests differences in journal false discovery rate by subject area and impact factor but not open access status, Decoy selection for protein structure prediction via extreme gradient boosting and ranking, QMachine: commodity supercomputing in web browsers, RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome, WGCNA: an R package for weighted correlation network analysis, Statistical analysis of real-time PCR data, A comparison of methods for differential expression analysis of RNA-seq data, Chronic Kidney Disease (CKD) among older people across Europe: findings from cross-sectional analysis of SCOPE H2020 project, Contrasting views: Whether to Order a CT Scan with Contrast or Not, Sign up for article alerts and news from this journal. Page RDM: BioGUID: resolving, discovering, and minting identifiers for biodiversity informatics. BMC Bioinformatics publishes many papers on text-mining topics, including the recently published supplement , which consists of papers presented at last year's BioCreAtIvE text-mining workshop in Granada, Spain. View Full Text View PDF Submit manuscript. Citation Impact3.242 - 2-year Impact Factor3.213 - 5-year Impact Factor1.156 - Source Normalized Impact per Paper (SNIP)1.626 - SCImago Journal Rank (SJR). BMC Bioinformatics Methodology article Open Access Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE) Ricardo ZN Vêncio*1,2, Helena Brentani3,4, Diogo FC Patrão3 and Carlos AB Pereira1,2 By using this website, you agree to our 2018;19(1):111. The journal is abstracted and indexed by: It first started to be indexed by ISI (Web of Science) in 2002,[2] and according to the Journal Citation Reports, the journal has a 2014 impact factor of 2.213. BioMed Central Page 1 of 15 (page number not for citation purposes) BMC Bioinformatics Open Access Research Validating module network learning algorithms using simulated data TomMichoel* †1, Steven Maere †1, Eric Bonnet 1, Anagha Joshi 1, Yvan Saeys 1, TimVan den Bulcke 2, Koenraad Van Leemput 3, Piet van Remortel 3, Martin Kuiper 1, Kathleen Marchal 2,4 and Yves Van de … It was established in 2000, and has been one of the fasting growing and most successful journals in the BMC Series of journals, publishing 1,000 articles in its first five years.[1]. BMC Bioinformatics 2009, 10(Suppl 14):S4. Citation: BMC Bioinformatics 2020 21(Suppl 10):349 Content type: Research. USA.gov. In celebration of what they started and showcasing areas of research that have since emerged, we here present a collection of articles from the BMC Biology, BMC Medicine, Genome Medicine and the BMC Series Journals on biology, diagnosis and treatment and wider public health and medical outcomes of the Hepatitis C virus and its infection. As a result of the significant disruption that is being caused by the COVID-19 pandemic we are very aware that many researchers will have difficulty in meeting the timelines associated with our peer review process during normal times. RN Lima et al. BMC Bioinformatics Research article Open Access Impact of residue accessible surface area on the prediction of protein secondary structures Amir Momen-Roknabadi1,3, Mehdi Sadeghi2,3, Hamid Pezeshk*4 and Sayed-Amir Marashi1,5,6 Editorial Board; Editor Profiles. Articles from BMC Bioinformatics are provided here courtesy of BioMed Central. The BMC Series Editorial site serves as a home for editorial board resources and as an online community, facilitating interaction and networking between the editorial board and the BMC series in-house team. For the first time, submissions were handled directly on the Springer Nature Editorial Manager system. BMC Bioinformatics is an open access, peer-reviewed journal  that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as well as other areas of computational biology. BMC Bioinformatics 2005, 6:S10 Page 2 of 8 (page number not for citation purposes) been recognized to have detrimental health effects both on wildlife and humans. Your browser needs to have JavaScript enabled to view this timeline. BMC Bioinformatics Methodology article Open Access Graph-based iterative Group Analysis enhances microarray interpretation Rainer Breitling*1,2, Anna Amtmann1 and Pawel Herzyk2,3 Address: 1Plant Science Group, Institute of Biomedical and Life Sciences , … We are particularly interested in hearing from researchers specializing in machine learning and artificial intelligence but all applications will be considered. Authors submitted initial manuscripts on original research or software and database articles, for consideration to BMC editors to nominate one of four BMC journals for submission of: BMC Genomics, BMC Bioinformatics, BMC Systems Biology or BMC Medical Genomics. 3. Acting as endocrine disrupters (EDC), they have been associated with several reproduc-tive disorders in animals and humans [2] and have become an important environmental concern. The impact factor (IF), also denoted as Journal impact factor (JIF), of an academic journal is a measure of the yearly average number of citations to recent articles published in that journal. statement and This special issue in BMC Bioinformatics (> Open Access) is aimed at reporting on recent research advances on theories and methods including Human-Computer Interaction & Knowledge Discovery/Data Mining (HCI-KDD), with focus on big data and complex data from the biomedical domain. BMC Bioinformatics 17 (Suppl 18), 489. Compared with historical Journal Impact data, the Metric 2019 of BMC Bioinformatics grew by 11.06%. BMC Bioinformatics is an open access, peer-reviewed journal that considers articles on all aspects of the development, testing and novel application of computational and statistical methods for the modeling and analysis of all kinds of biological data, as … We are currently looking for new Associate Editors to join our team of academic editors, assessing manuscripts in the field of bioinformatics. BMC Bioinformatics Correction Open Access Granger causality vs. dynamic Bayesian network inference: a comparative study Cunlu Zou1, Katherine J Denby2 and Jianfeng Feng*1,3 Address: 1Department of Computer Science, Un iversity of Warwick, Coventry, UK, 2Warwick HRI … NIH. BMC Bioinformatics is a peer-reviewed open access scientific journal covering bioinformatics and computational biology published by BioMed Central. Related Article to this article has been published in BMC Bioinformatics 2009, 10(Suppl 14):S3. 2016 Dec 15. Hajibabaei M and Singer GAC:Googling DNA Sequences on the World Wide Web. The Journal Impact Quartile of BMC Bioinformatics is Q1. BMC Bioinformatics IF is increased by a factor of 0.26 and approximate percentage change is 11.06% when compared to preceding year 2017, which shows a rising trend. Authors: Matt Velinder, Dillon Lee and Gabor Marth, Authors: Federico Marini, Jan Linke and Harald Binder, Authors: Nasrin Akhter, Gopinath Chennupati, Hristo Djidjev and Amarda Shehu, Authors: Daniel Ruiz-Perez, Haibin Guan, Purnima Madhivanan, Kalai Mathee and Giri Narasimhan, Authors: Sean R Wilkinson and Jonas S Almeida, The This is an editorial report of the supplements to BMC Bioinformatics that includes 6 papers selected from the BIOCOMP’19—The 2019 International Conference on Bioinformatics and Computational Biology. [3], "Delayed impact: ISI's citation tracking choices are keeping scientists in the dark", https://en.wikipedia.org/w/index.php?title=BMC_Bioinformatics&oldid=977915225, Bioinformatics and computational biology journals, Creative Commons Attribution-licensed journals, Short description is different from Wikidata, Creative Commons Attribution-ShareAlike License, This page was last edited on 11 September 2020, at 19:11. BMC Bioinformatics 2006, 7(Suppl 4):S19 Page 2 of 11 (page number not for citation purposes) of such fast growing data is becoming one of the major bottlenecks in the utilization of the technology. Citation: BMC Bioinformatics 2019 20(Suppl 23):606 Content type: Software. Cookies policy. Manage cookies/Do not sell my data we use in the preference centre. Please review our privacy policy. Analysis and modelling of complex systemsComparative genomicsData visualizationImaging, and image analysis Knowledge-based analysisMachine learning and artificial intelligence in bioinformaticsNetworks analysisNovel computational methods for the analysis of biological systemsProteomicsSequence analysis Structural analysisTranscriptome analysis. Aims and scope. BMC Bioinformatics Research article Open Access Merging microarray data from separate breast cancer studies provides a robust prognostic test Lei Xu* 1, Aik Choon Tan , Raimond L Winslow1 and Donald Geman1,2 Address: 1The Institute for Computational Medicine and Center for Cardiovascular Bioinformatics and Modeling, Johns Hopkins University, 5. Terms and Conditions, It was established in 2000, and has been one of the fasting growing and most successful journals in the BMC Series of journals, publishing 1,000 articles in its first five years. BMC Bioinformatics Methodology article Open Access Evaluation of absolute quantitation by nonlinear regression in probe-based real-time PCR Rasmus Goll*1,2, Trine Olsen2, Guanglin Cui2 and Jon Florholmen1,2 Address: 1Institute of Clinical Medicine, University of Tromso, Tromso, Norway and 2Department of gastroenterology, University hospital of Bioinformatics. The 2020 Nobel Prize for Physiology or Medicine was awarded to Harvey J. BMC Bioinformatics 2006, 7(Suppl 2):S22 Page 2 of 18 (page number not for citation purposes) and ΔG. BMC Bioinformatics Research article Open Access A web services choreography scenario for interoperating bioinformatics applications Remko de Knikker 1, Youjun Guo , Jin-long Li1, Albert KH Kwan2, Kevin Y Yip2, David W Cheung2 and Kei-Hoi Cheung*1,3 Support Center Support Center. PubMed PubMed Central Article CAS Google Scholar 32. BMC Bioinformatics Research article Open Access Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation Jamie A Lee†1, Robert S Sinkovits †3, Dennis Mock †3, Eva L Rab 1, Jennifer Cai 1, BMC Bioinformatics 17 (Suppl 18), 472. BMC Bioinformatics Proceedings Open Access Identification of temporal association rules from time-series microarray data sets Hojung Nam1, KiYoung Lee2 and Doheon Lee*1 Address: 1Department of Bio and Brain Engineering, KAIST, 373-1 Guseong-dong, Yuseong-gu, Daejeon, Korea and 2Department of © 2020 BioMed Central Ltd unless otherwise stated. The cross-domain integration and appraisal of different fields shall foster different perspectives and opinions; it … Part of BMC Bioinformatics Methodology article Open Access Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine Chenghai Xue†2,1, Fei Li†1, Tao He1, Guo-Ping Liu2,3, Yanda Li1 and Xuegong Zhang*1 BMC Bioinformatics BMC Bioinformatics 2002, 3Research article x Computational method for reducing variance with Affymetrix microarrays Stephen Welle*1, Andrew I Brooks 2 and Charles A Thornton3 Address: 1Departments of Medicine, Pharmacology & Physiology, University of Rochester, Rochester, NY 14642, USA, 2Functional Genomics NLM. Neural Networks and a Threshold Selector Algorithm FR Cerqueira et al browser needs to have JavaScript to. A peer-reviewed open access scientific Journal covering Bioinformatics and computational biology published by BioMed Central use in bmc. 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